SUNDAY, OCTOBER 2, 2022
10:10 AM -10:20 AM Feline: “Single haplotype genome assemblies spanning the felid phylogeny” William Murphy, Texas A&M, USA
7:45 AM Breakfast 8:00 AM – 12:00 PM Registration 9:00 AM – 9:10 AM Welcome and Introduction Greg Barsh 9:10 AM – 10:40 AM & 11:15 AM – 12:15 PM Jackson Center Session: Reference genomes, assemblies, and annotations: applications and approaches
10:20 AM – 10:40 AM Assembly round table discussion
10:40 AM – 11:15 AM Break and Exibits Jackson Center B. Annotation Jackson Center 11:15 AM -11:25 AM The bioinformatics challenge to annotate the non-coding genome and predict its functions Christophe Hitte, University Rennes, France. 11:25 AM -11:35 AM The DoGA project, functional annotation of the dog genome Hannes Lohi, University of Helsinki, Finland 11:35 AM -11:55 AM How to use the DoGA data? Matthias Hörtenhuber, Karolinska Institute, Sweden (remote presentation)
Chair: Jeffrey Schoenebeck, Christophe Hitte and Hannes Lohi A. Genome Assembly 9:10 AM -9:20 AM Canine: “Use of linkage disequilibrium to assess large-scale assembly structure of canine reference genomes”. Reuben Buckley, NHGRI, USA 9:20 AM – 9:30 AM Canine: “The German Shepherd, Mischka: Uppsala University UU_Cfam_GSD_1.0, GCA_011100685.1”. Jennifer Meadows, Uppsala University, Sweden 9:30 AM – 9:40 AM Canine:“Importance of updated informatics tools for genome assembly.” Jeffrey Kidd, University of Michigan, USA 9:40 AM – 9:50 AM Canine: “Assembly, annotation, and future improvements to the Labrador Retriever assembly ROS_Cfam1.0”. Jeffrey Schoenebeck, University of Edinburgh, UK 9:50 AM-10:00 AM Canine: “De novo chromosome-length genome assembly of the Australian Alpine dingo with comparisons to the Desert Dingo and modern bred dogs” Bill Ballard, La Trobe University, Australia
11:55 AM – 12:15 PM Jackson Center Annotation round table discussion
12:15 PM – 1:30 PM Jackson Center Lunch 1:30 PM – 2:20 PM Jackson Center Session: 99 Lives Project Chair: Leslie Lyons, University of Missouri, USA 1:30 PM –1:40 PM 99 Lives Cat Genome Consortium - status and progress Leslie Lyons, University of Missouri, USA 1:40 PM -1:55 PM De novo mutation rate in the domestic cat Richard Wang, Indiana University, USA 1:55 PM -2:05 PM 99 Lives Hypertrophic Cardiomyopathy working group updates Bart Broeckx, Ghent University, Belgium
10:00 AM- 10:10 AM Feline: “Variant discovery using FelCat 9.0” Leslie Lyons, University of Missouri, USA
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